MASTERMIND {API}
All of the Power of the Mastermind Genomic Search Engine - Automated.
The Mastermind API
Mastermind offers an API for integrating insight from the genomic medical literature into your platform or automated genomic analysis pipeline.
API Demo
Suggestions Endpoint
Returns the canonical name(s) to query in Mastermind for the given disease, gene, or variant.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
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Response
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Counts Endpoint
Returns the number of articles that match the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
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Response
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Articles Endpoint
Returns the list of articles, ranked by relevance, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
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Response
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Diseases Endpoint
Returns the top 5 diseases, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
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Response
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Phenotypes Endpoint
Returns the top 5 phenotypes, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
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Response
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Therapies Endpoint
Returns the top 5 therapies, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
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Response
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Genes Endpoint
Returns the top 5 genes, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
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Response
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Variants Endpoint
Returns the top 5 variants, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
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Request
Response
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CNVs Endpoint
Returns the top 5 CNVs, ranked by number of matched articles, for the given query.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
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Request
Response
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Article Info Endpoint
Returns the matched diseases, genes, variants, and article meta-data for the given article PMID.
See the full API documentation linked above for details and information about each of the input filters below, including acceptable values, formatting, etc.
API Results
Submit API URL query to see results.
Request
Response
Submit API query above to see results.
"File Annotation Counts" Endpoint
Returns an annotated VCF from an input VCF file containing multiple variants as genomic coordinates with each variant in the output file annotated with the number of articles and Mastermind URL for each variant.
Easily integrate evidence from Mastermind into your existing genomics pipeline. Use the API to upload a VCF file, and get automatic annotations from Mastermind.
Mastermind VCF Annotations add annotations to variants containing the nubmer of publications which cite evidence for the variant, along with a URL to investigate the evidence.
Two annotations are added to each variant within the VCF file which contains evidence found by Mastermind in the medical literature:
MMCNT
: The number of articles found for this variant.MMURI
: The Mastermind URL to view and investigate the matched articles.