All of the Power of the Mastermind Genomic Search Engine - Automated.
The Mastermind API
Mastermind offers a Base API and Advanced API for integrating insight from the genomic medical literature into your platform or automated genomic analysis pipeline.
API Demo
Try the interactive demo below, powered by the Mastermind API.
"Suggestions" Endpoint Base API
Returns the canonical name(s) to query in Mastermind for the given disease, gene, or variant.
API Results
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Request
Response
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"Counts" Endpoint Base API
Returns the number of articles that match the given query.
Additional search parameters available for this endpoint include, categories
, scope
, and since
. See the full API documentation for details.
API Results
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Request
Response
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"Articles" Endpoint Advanced API
Returns the list of articles, ranked by relevance, for the given query.
Additional search parameters available for this endpoint include, categories
, scope
, and since
. See the full API documentation for details.
API Results
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Request
Response
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"Diseases" Endpoint Advanced API
Returns the top 5 diseases, ranked by number of matched articles, for the given query.
Additional search parameters available for this endpoint include, categories
, scope
, and since
. See the full API documentation for details.
API Results
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Request
Response
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"Genes" Endpoint Advanced API
Returns the top 5 genes, ranked by number of matched articles, for the given query.
Additional search parameters available for this endpoint include, categories
, scope
, and since
. See the full API documentation for details.
API Results
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Request
Response
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"Variants" Endpoint Advanced API
Returns the top 5 variants, ranked by number of matched articles, for the given query.
Additional search parameters available for this endpoint include, categories
, scope
, and since
. See the full API documentation for details.
API Results
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Request
Response
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"Article Info" Endpoint Advanced API
Returns the matched diseases, genes, variants, and article meta-data for the given article PMID.
API Results
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Request
Response
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"File Annotation Counts" Endpoint Advanced API
Returns an annotated VCF from an input VCF file containing multiple variants as genomic coordinates with each variant in the output file annotated with the number of articles and Mastermind URL for each variant.
Easily integrate evidence from Mastermind into your existing genomics pipeline. Use the API to upload a VCF file, and get automatic annotations from Mastermind.
Mastermind VCF Annotations add annotations to variants containing the nubmer of publications which cite evidence for the variant, along with a URL to investigate the evidence.
Two annotations are added to each variant within the VCF file which contains evidence found by Mastermind in the medical literature:
MMCNT
: The number of articles found for this variant.MMURI
: The Mastermind URL to view and investigate the matched articles.